Package: glycanr 0.4.0

glycanr: Tools for Analysing N-Glycan Data

Useful utilities in N-glycan data analysis. This package tries to fill the gap in N-glycan data analysis by providing easy to use functions for basic operations on data (see <https://en.wikipedia.org/wiki/Glycomics> for more details on Glycomics). At the moment 'glycanr' is mostly oriented to data obtained by UPLC (Ultra Performance Liquid Chromatography) and LCMS (Liquid chromatography–mass spectrometry) analysis of Plasma and IgG glycome.

Authors:Ivo Ugrina [aut, cre, cph], Lucija Klaric [aut], Alyce Russell [aut], Frano Vuckovic [aut]

glycanr_0.4.0.tar.gz
glycanr_0.4.0.zip(r-4.5)glycanr_0.4.0.zip(r-4.4)glycanr_0.4.0.zip(r-4.3)
glycanr_0.4.0.tgz(r-4.4-any)glycanr_0.4.0.tgz(r-4.3-any)
glycanr_0.4.0.tar.gz(r-4.5-noble)glycanr_0.4.0.tar.gz(r-4.4-noble)
glycanr_0.4.0.tgz(r-4.4-emscripten)glycanr_0.4.0.tgz(r-4.3-emscripten)
glycanr.pdf |glycanr.html
glycanr/json (API)
NEWS

# Install 'glycanr' in R:
install.packages('glycanr', repos = c('https://iugrina.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/iugrina/glycanr/issues

Datasets:
  • mpiu - Multiple plates IgG UPLC data example
  • mpiunorm - Normalized mpiu data

On CRAN:

12 exports 3 stars 1.18 score 47 dependencies 1 mentions 14 scripts 229 downloads

Last updated 3 years agofrom:1055905c75. Checks:OK: 6 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 25 2024
R-4.5-winOKAug 25 2024
R-4.5-linuxERRORAug 25 2024
R-4.4-winOKAug 25 2024
R-4.4-macOKAug 25 2024
R-4.3-winOKAug 25 2024
R-4.3-macOKAug 25 2024

Exports:glyco.outliersglyco.plotildtildt.translateiudtiudt.translatemediannormmedianquotientnormphdtquantilenormrefpeaknormtanorm

Dependencies:clicodetoolscoincolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelibcoinlifecyclemagrittrMASSMatrixmatrixStatsmgcvmodeltoolsmultcompmunsellmvtnormnlmepillarpkgconfigpurrrR6RColorBrewerrlangsandwichscalesstringistringrsurvivalTH.datatibbletidyrtidyselectutf8vctrsviridisLitewithrzoo

Introduction vignette

Rendered fromintroduction.Rmdusingknitr::knitron Aug 25 2024.

Last update: 2021-03-29
Started: 2015-09-17

Plotting vignette

Rendered fromplots.Rmdusingknitr::knitron Aug 25 2024.

Last update: 2021-03-29
Started: 2014-08-12