Package: glycanr 0.4.0

glycanr: Tools for Analysing N-Glycan Data

Useful utilities in N-glycan data analysis. This package tries to fill the gap in N-glycan data analysis by providing easy to use functions for basic operations on data (see <https://en.wikipedia.org/wiki/Glycomics> for more details on Glycomics). At the moment 'glycanr' is mostly oriented to data obtained by UPLC (Ultra Performance Liquid Chromatography) and LCMS (Liquid chromatography–mass spectrometry) analysis of Plasma and IgG glycome.

Authors:Ivo Ugrina [aut, cre, cph], Lucija Klaric [aut], Alyce Russell [aut], Frano Vuckovic [aut]

glycanr_0.4.0.tar.gz
glycanr_0.4.0.zip(r-4.5)glycanr_0.4.0.zip(r-4.4)glycanr_0.4.0.zip(r-4.3)
glycanr_0.4.0.tgz(r-4.4-any)glycanr_0.4.0.tgz(r-4.3-any)
glycanr_0.4.0.tar.gz(r-4.5-noble)glycanr_0.4.0.tar.gz(r-4.4-noble)
glycanr_0.4.0.tgz(r-4.4-emscripten)glycanr_0.4.0.tgz(r-4.3-emscripten)
glycanr.pdf |glycanr.html
glycanr/json (API)
NEWS

# Install 'glycanr' in R:
install.packages('glycanr', repos = c('https://iugrina.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/iugrina/glycanr/issues

Datasets:
  • mpiu - Multiple plates IgG UPLC data example
  • mpiunorm - Normalized mpiu data

On CRAN:

4.62 score 3 stars 14 scripts 220 downloads 1 mentions 12 exports 47 dependencies

Last updated 4 years agofrom:1055905c75. Checks:OK: 6 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 23 2024
R-4.5-winOKNov 23 2024
R-4.5-linuxERRORNov 23 2024
R-4.4-winOKNov 23 2024
R-4.4-macOKNov 23 2024
R-4.3-winOKNov 23 2024
R-4.3-macOKNov 23 2024

Exports:glyco.outliersglyco.plotildtildt.translateiudtiudt.translatemediannormmedianquotientnormphdtquantilenormrefpeaknormtanorm

Dependencies:clicodetoolscoincolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelibcoinlifecyclemagrittrMASSMatrixmatrixStatsmgcvmodeltoolsmultcompmunsellmvtnormnlmepillarpkgconfigpurrrR6RColorBrewerrlangsandwichscalesstringistringrsurvivalTH.datatibbletidyrtidyselectutf8vctrsviridisLitewithrzoo

Introduction vignette

Rendered fromintroduction.Rmdusingknitr::knitron Nov 23 2024.

Last update: 2021-03-29
Started: 2015-09-17

Plotting vignette

Rendered fromplots.Rmdusingknitr::knitron Nov 23 2024.

Last update: 2021-03-29
Started: 2014-08-12